wiki.vhlab.org

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• http://wiki.vhlab.org/home
• -Techniques and tricks
• Cables
• Breaking into a cable
• Connecting to BNC cables
• Cell phones
• Compressed gases and air handling
• Capnography: modifying a Novametrix/Philips Respironics neonatal airway adapter for small animal use
• Setting up a compressed gas system
• Electrophysiology / Needlecraft / Pipettes
• Chloriding a silver wire -- making a silver chloride electrode
• Coating electrodes with Di-I
• How to make a smooth needle (cannula)
• Making a nice acute recording reference wire
• Making Microwire Electrodes
• Step by Step Instructions
• Pulling tapered pipettes for anatomy / virus delivery / bulk loading
• Testing gain of 10,000x amplifier
• Figures
• Github
• Google tools
• Grants
• Halogen lamp illumination
• HDMI
• Image processing
• Making the background of an image transparent
• LED illumination
• LED illumination of optical fibers
• Positionable LED mounts
• Mac OS X
• Calibrating a stimulus monitor with Spyder Express 3
• Command line
• Launching vim from Matlab
• Log someone out on command line
• Opening Xterm to the path selected in Finder
• Runaway processes
• Scheduling recurring jobs
• Updating to Lion / Mountain Lion / Mavericks / Yosemite
• Git and XCode 14
• Matlab
• A quick Matlab tutorial
• Coding punctuation
• Export Matlab figures to Illustrator
• f1/f0 demo
• Files and directories (saving, loading, paths)
• Integrate and fire
• Jupyter Notebook with Matlab
• Manually adding a license (Brandeis-specific)
• Reading/writing images
• User input
• Measuring light with a photodiode
• Printed Circuit Boards
• Making a Printed Circuit Board
• Optogenetics
• Fiber optics
• ProjectorScope 1
• Scanbox
• Software
• Installing bzr
• Synology NAS
• Windows
• Writing tips
• _Our standard rig plan
• __How to run things
• _Setting up to acquire data
• Aborting a stimulus run
• FAQ
• Two-photon recordings
• z_Specific experiments
• ChR2Projector panel
• Video acquisition on Marek through LabView
• _Overview
• Data organization
• Directory structure and reference.txt files
• Files created by vhlabtools and other devices we use before/during acquisition
• How to examine stimulus triggers in Intan record
• How to examine the parameters of stimuli that were run
• how-to-examine-voltage-data-in-intan-record
• Modules
• _Status/timing information
• Interconnect Boxes
• Intrinsic signal imaging
• Hardware
• Intrinsic Imaging (analysis)
• FAQ
• LabView Intrinsic imaging (acquisition)
• FAQ
• Quick users guide
• LabView multichannel analog input
• Multichannel Intan recording (for multichannel analysis)
• Two-Photon
• 2p analysis for dummies - analyzing responses of cells in time series raster images
• Customizing TwoPhoton Analyses
• Development
• FAQ
• How do I organize my external 2-photon or confocal data to be analyzed by the VHlabtools?
• Line scan analysis
• Reading out fluorescent traces
• RunExperiment environment
• ChR2Sheet
• Troubleshooting
• How to examine stochasticgrid or blinkingstim frames
• How to set things up the first time
• Code
• Data analysis (after data extraction)
• FAQ
• Measures of orientation and direction selectivity
• Skeleton code for automatic fits
• Using the VHlab database, aka the 'experiment' file
• Example 1: Examining the contents of a VHLab database
• Example 2: Running off-line fitting analyses
• Example 3: Reading from the database, performing additional analysis, and adding results back to the database
• Example 4: Plotting and calculating some results
• The associate type guide
• zSpecific Studies
• CSD Analysis
• csdGUI
• csdTBI
• Data analysis for DOG and SSM fits
• Orientation and direction tuning
• blinkingstim
• zOther labs
• Fitz Lab Rigs Overview
• zOut_of_date
• Downloads
• Installation
• Contents
• Development tools
• Installation-preJuly2010
• Re-routing remote communication
• What you'll need
• Software Development
• Bugs
• Development wish list
• Library info
• Fitz Lab tools
• Sheets and Sheetlets
• NewStim
• Bugs
• Development
• Fine details of NewStim stimulus display
• Function Reference
• Monitor Calibration
• Using NewStim
• Closing the stimulus windows in Matlab/Psychtoolbox when you can't see the command line
• Creating new types of stimuli
• DrawStimulus
• Stimulus display improvements
• Psychophysics Toolbox

• Click here
• Click here

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