guide.cryosparc.com

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• name: twitter:title content: About CryoSPARC™ | CryoSPARC Guide
• name: twitter:description content: General information about the software platform.
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• http://guide.cryosparc.com/
• http://guide.cryosparc.com/licensing
• http://guide.cryosparc.com/setup-configuration-and-management/hardware-and-system-requirements
• http://guide.cryosparc.com/setup-configuration-and-management/cryosparc-installation-prerequisites
• http://guide.cryosparc.com/setup-configuration-and-management/how-to-download-install-and-configure
• http://guide.cryosparc.com/setup-configuration-and-management/software-updates
• http://guide.cryosparc.com/setup-configuration-and-management/management-and-monitoring-4.7
• http://guide.cryosparc.com/setup-configuration-and-management/management-and-monitoring-v5.0
• http://guide.cryosparc.com/setup-configuration-and-management/software-system-guides
• http://guide.cryosparc.com/setup-configuration-and-management/cryosparc-on-aws
• http://guide.cryosparc.com/setup-configuration-and-management/troubleshooting
• http://guide.cryosparc.com/application-guide/a-tour-of-the-cryosparc-interface
• http://guide.cryosparc.com/application-guide/browsing-the-cryosparc-instance
• http://guide.cryosparc.com/application-guide/projects-workspaces-and-live-sessions
• http://guide.cryosparc.com/application-guide/jobs
• http://guide.cryosparc.com/application-guide/job-views-cards-tree-and-table
• http://guide.cryosparc.com/application-guide/creating-and-running-jobs
• http://guide.cryosparc.com/application-guide/inspecting-job-data
• http://guide.cryosparc.com/application-guide/low-level-results-interface
• http://guide.cryosparc.com/application-guide/filters-and-sorting
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• http://guide.cryosparc.com/application-guide/tags
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• http://guide.cryosparc.com/application-guide/blueprints
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• http://guide.cryosparc.com/application-guide/managing-jobs
• http://guide.cryosparc.com/application-guide/interactive-jobs
• http://guide.cryosparc.com/application-guide/upload-local-files
• http://guide.cryosparc.com/application-guide/managing-data
• http://guide.cryosparc.com/application-guide/downloading-and-exporting-data
• http://guide.cryosparc.com/application-guide/instance-management
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• http://guide.cryosparc.com/cryo-em-foundations/image-formation
• http://guide.cryosparc.com/expectation-maximization-in-cryo-em
• http://guide.cryosparc.com/processing-data/get-started-with-cryosparc-introductory-tutorial
• http://guide.cryosparc.com/processing-data/tutorial-videos
• http://guide.cryosparc.com/processing-data/all-job-types-in-cryosparc
• http://guide.cryosparc.com/processing-data/automated-workflows
• http://guide.cryosparc.com/processing-data/cryosparc-tools
• http://guide.cryosparc.com/processing-data/tutorials-and-case-studies
• http://guide.cryosparc.com/processing-data/webinar-recordings
• http://guide.cryosparc.com/live/about-cryosparc-live
• http://guide.cryosparc.com/live/prerequisites-and-compute-resources-setup
• http://guide.cryosparc.com/live/how-to-access-cryosparc-live
• http://guide.cryosparc.com/live/ui-overview
• http://guide.cryosparc.com/live/new-live-session-start-to-finish-guide
• http://guide.cryosparc.com/live/tutorial-videos
• http://guide.cryosparc.com/live/live-jobs-and-session-level-functions
• http://guide.cryosparc.com/live/performance-metrics
• http://guide.cryosparc.com/live/managing-a-cryosparc-live-session-from-the-cli
• http://guide.cryosparc.com/live/managing-a-cryosparc-live-session-from-the-cli-v5.0
• http://guide.cryosparc.com/live/faqs-and-troubleshooting
• http://guide.cryosparc.com/guides-for-v3/user-interface-and-usage-guide
• http://guide.cryosparc.com/guides-for-v3/job-builder-tutorial
• http://guide.cryosparc.com/guides-for-v3/cryo-em-data-processing-in-cryosparc-introductory-tutorial
• http://guide.cryosparc.com/guides-for-v3/tutorial-manually-curate-exposures
• http://guide.cryosparc.com/guides-for-v3/tutorial-data-management-in-cryosparc
• http://guide.cryosparc.com/resources/questions-and-support
• http://guide.cryosparc.com/#what-is-cryosparc-tm
• http://guide.cryosparc.com/#what-is-cryosparc-live-tm
• http://guide.cryosparc.com/#licensing
• http://guide.cryosparc.com/#citation
• http://guide.cryosparc.com/#cryosparc-algorithms
• http://guide.cryosparc.com/#cryosparc-implementations
• http://guide.cryosparc.com/#wrappers-to-third-party-tools
• http://guide.cryosparc.com/#dependencies
• http://guide.cryosparc.com/#cryosparc-in-scientific-studies
• http://guide.cryosparc.com/#development
• http://guide.cryosparc.com/#major-version-history
• llms.txt
• Markdown
• http://guide.cryosparc.com/#cudnn
• http://guide.cryosparc.com/#scikit-cuda

• https://cryosparc.com/updates
• https://www.gitbook.com/?utm_source=content&utm_medium=trademark&utm_campaign=-M7DGv3GkRvGGpbVPCgg&utm_content=site_S8RvN
• https://cryosparc.com/
• https://cryosparc.com/live
• Punjani, A., Rubinstein, J.L., Fleet, D.J. & Brubaker, M.A. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nature Methods 14, 290-296 (2017).
• Rubinstein, J.L. & Brubaker, M.A. Alignment of cryo-EM movies of individual particles by optimization of image translations. Journal of Structural Biology 192 (2), 188-195 (2015).
• Punjani, A., Zhang, H. & Fleet, D.J. Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction. Nat Methods
• Punjani, A. & Fleet, D.J. 3D variability analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM. Journal of Structural Biology, Volume 213, Issue 2, 2021. https://doi.org/10.1016/j.jsb.2021.107702
• Punjani, A. & Fleet, D.J. 3DFlex: determining structure and motion of flexible proteins from cryo-EM. Nature Methods (2023). https://doi.org/10.1038/s41592-023-01853-8
• Stagg, S.M., Noble, A.J., Spilman, M. & Chapman, M.S. ResLog plots as an empirical metric of the quality of cryo-EM reconstructions. Journal of Structural Biology 185 (3), 418-426 (2014).
• Zivanov, J., Nakane, T. & Scheres, S. H. W. Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in
• Zivanov, J., Nakane, T. & Scheres, S. H. W. A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis. IUCrJ 6, 5-17 (2019).
• http://biorxiv.org/content/early/2016/07/04/061960
• Rohou, A. & Grigorieff, N. CTFFIND4: Fast and accurate defocus estimation from electron micrographs. Journal of Structural Biology 192 (2), 216-221 (2015).
• https://doi.org/10.1016/j.jsb.2015.11.003
• https://doi.org/10.1101/838920
• Tan, Y.Z., Baldwin, P.R., Davis, J.H., Williamson, J.R., Potter, C.S., Carragher, B. & Lyumkis, D. Addressing preferred specimen orientation in single-particle cryo-EM through tilting. Nature Methods 14, 793-796 (2017).
• https://docs.nvidia.com/deeplearning/cudnn/sla/index.html
• https://scikit-cuda.readthedocs.io/en/latest/
• Google Scholar: cryoSPARC
• Structura Biotechnology Inc.
• GitBook's documentation

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