www.pombase.org

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• name: title content: PomBase, the S. pombe genome database
• name: description content: PomBase is a comprehensive database for the fission yeast Schizosaccharomyces pombe, providing structural and functional annotation, literature curation and access to large-scale data sets
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• property: og:title content: PomBase - The Schizosaccharomyces pombe genome database

• http://www.pombase.org/
• All community curation ...
• Contact curators ...
• About PomBase
• Documentation
• Advanced search
• GO-CAM pathways page
• Gene
• Term
• Publication
• Pathway
• View all ...
• http://www.pombase.org/reference/PMID:41144523
• View more Community Curation spotlights ...
• View the protein characterization graph
• View more PomBase features ...
• Replication fork stalling elicits chromatin compaction for the ...
• Characterization of oncohistone H2B variants in Schizosaccharomyces ...
• Actin arginylation alters myosin engagement and F-actin patterning ...
• Septins function in exocytosis via physical interactions with ...
• PomBase staff curated publications ...
• http://www.pombase.org/community/pombetalks
• News archive ...
• PomBase publications page
• http://www.pombase.org/assets/newsfeed/gocam-summary-map.png
• View all models - connected and unconnected
• View only connected models
• http://www.pombase.org/assets/newsfeed/gocam-mega-model.png
• View all models
• View only connected models
• PomBase JBrowse V2
• 1000 fission yeast proteins
• L-proline biosynthetic process (GO:0055129), proline catabolic process to glutamate (GO:0010133), glutamine biosynthetic process (GO:0006542))
• http://www.pombase.org/assets/newsfeed/gocam-update-1000-genes.png
• PomBase publication page PMID:40015273
• http://www.pombase.org/jbrowse/?loc=II%3A4442142..4454370&tracks=Forward%20strand%20features%2CReverse%20strand%20features%2CPho7%20ChIP-seq%20%3B%20repeat%201%20-%20Skribbe%20et%20al.%20(2025)&tracklist=1&nav=1&overview=1&highlight
• list of these missing activities
• Protein coding gene characterization status at PomBase
• GO-CAM pathway list
• aromatic amino acid biosynthetic process (GO:0009073)
• http://www.pombase.org/assets/newsfeed/gocam_pathway_hole.png
• http://www.pombase.org/assets/newsfeed/pombase-gcbr-roc.png
• vitamin B6 metabolic process
• http://www.pombase.org/assets/newsfeed/go-cam_vitamin_B6_metabolic_process.png
• Example from cpy1
• http://www.pombase.org/assets/newsfeed/feature-full-view-cpy1-mobidb-big.png
• Imported data
• http://www.pombase.org/assets/newsfeed/feature-full-view-cpy1-big.png
• MEIOB
• PEX26 (Sc PEX15)
• OCIAD1 and OCIAD2
• SIKE1 and FGFR1OP2
• NGRN
• TFAM
• NDUFA3
• CCZ1
• MNE1
• OM14
• PEX22
• CAF130
• 3641 (72%)
• 4006 (79%)
• http://www.pombase.org/assets/newsfeed/Rhee_lab_unknowns_coverage.png
• the SPRRNA.03 gene page
• http://www.pombase.org/assets/newsfeed/rna_structure_SPRRNA.03_page.png
• Browse the new disease list
• Overview of disease associations (disease slim)
• http://www.pombase.org/assets/newsfeed/genetics_2024_paper_fig_5.png
• histone H3.1 gene page
• http://www.pombase.org/assets/newsfeed/gene-hht1-protein-feature-viewer-page.png
• http://www.pombase.org/assets/newsfeed/protein-feature-modification-key.png
• protein feature view documentation page
• http://www.pombase.org/assets/newsfeed/cdc2-substrates-to-advanced-search.png
• http://www.pombase.org/assets/newsfeed/elixir_pombase_cdr_announcement.png
• http://www.pombase.org/assets/newsfeed/new_canto_video_docs.png
• http://www.pombase.org/assets/newsfeed/nomenclature_paper_for_news_big.png
• http://www.pombase.org/assets/newsfeed/genes-list-from-ref-page.png
• cdc15 gene page
• http://www.pombase.org/assets/gene-protein-feature-viewer-widget-cdc15.png
• http://www.pombase.org/assets/gene-protein-feature-viewer-page-cdc15.png
• 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849) term page
• http://www.pombase.org/assets/newsfeed/rhea-reaction-example.png
• allele dataset
• lsm7/SPCC285.12 gene page
• PMID:31010807 Garg
• Proteins with PDB structures
• http://www.pombase.org/assets/newsfeed/pdb_structures_lsm7_small.png
• http://www.pombase.org/assets/newsfeed/alphafold-news-item-example-1.png
• Thodberg

• https://lists.cam.ac.uk/sympa/info/ucam-pombelist
• https://spombe.slack.com/
• https://bsky.app/profile/pombase.bsky.social
• Mastodon
• https://www.facebook.com/pombase
• https://github.com/pombase
• https://www.linkedin.com/groups/5122686
• https://globalbiodata.org/scientific-activities/global-core-biodata-resources/
• Core data resource (CDR)
• https://www.japonicusdb.org
• PLoS Biol
• N.A. Vasilevsky
• A.F. Green
• A.F. Green
• this page
• FAIR compliant
• Read the paper
• 6,461 human gene annotations
• Explore the functionome
• Global Biodata Coalition
• Global Core BioData Resource of the week - LinkedIn
• Pfam NAR update
• MobiDB-lite
• RCSB PDB
• Open Source software
• pombeTalks
• Pfam-N
• JackHMMER
• FoldSeek
• this pombelist post
• “Hidden in plain sight: What Remains to be discovered in the eukaryotic proteome?”
• Rhee lab GO overview
• Xue, B., & Rhee, S. Y. (2023). Status of genome function annotation in model organisms and crops. Plant Direct, 7(7), e499.
• Rutherford
• R2DT (RNAcentral)
• MalaCards
• knowledge graph
• report this to Monarch
• Monarch Initiative blog post
• InterPro
• release 100.0
• ELIXIR
• 22 member countries
• New Canto documentation front page
• Canto
• PomBase YouTube channel
• published in Genetics GSA
• Lera-Ramírez
• Rhea
• PDB
• Mol*
• Wellcome Trust
• University of Cambridge
• University College London
• Babraham Institute
• ELIXIR-UK Node Service
• https://wellcome.ac.uk/
• https://www.sysbiol.cam.ac.uk/
• https://www.cam.ac.uk/
• https://www.ucl.ac.uk/
• https://elixir-europe.org/

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>>> Last update of RDAP database: 2026-08-19T03:24:16Z         

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